CNV Browser
Sample
Show all chromosomes
Max displayed chromosome plots
Overview
Show chromosome grid image
CNV thresholds
Gain threshold (region log2 >=
Loss threshold (region log2 <=
Gene filters
Min bins
Min |mean_log2|
Min |median_log2|
Filters
Hide neutral regions
Prefer resolved gene symbols
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Reset
Sample summary
Download grid web PNG
Download grid full PNG
Download grid PDF
Download selected chromosome PNGs
Overview
Chromosome plots
CNV regions
Genes in CNV regions
All genes from CNR bins
Aneuploidies
Gene/sample search
Download table as XLSX
Download table as XLSX
Download table as XLSX
Min. % of genes on the chromosome with the matching copy number
Type
Trisomy (CN 3)
Monosomy (CN 1)
Based on the segment copy number (.call.cns) of every gene with a call.
Download table as XLSX
Samples
Sample IDs
Upload sample sheet TXT
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Genes
Gene symbols or gene labels
Upload gene sheet TXT
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Direction
Gain
Loss
Gain or loss
Gain threshold (region log2 >=)
Loss threshold (region log2 <=)
Apply gain/loss threshold even when samples are specified
Apply
Reset
Download table as XLSX